BtaEX6009853 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44810732-44812252:-
Coord C1 exon
chr2:44812125-44812252
Coord A exon
chr2:44811943-44812037
Coord C2 exon
chr2:44810732-44810921
Length
95 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTCTGTCTTTCAGGTT
3' ss Score
13.23
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
AGATAAATATTCAAGAACTGCTTTCAAAACTGAATGATATTGTTAAAAGTTCAGATAAAAATGTACGTACTAGGGCACTTTGGGTGATATCCAAGCAGACGTTTCCCACTGAAGTCGTTGGCAAAGTA
Seq A exon
GTTTCTAGTATCATTGACTCACTAGAAATAGTATTTAATAGAGGAGAGATGCTTTCTGCTGTTGTGGATTATGAAGCATTAAATGTCATTATAAG
Seq C2 exon
ACTAATTGAACAAGCCCCAGTTCAAATGGGAGAAGAGTCAATTAGGTGGGCAAAATTGGTCATACCTTTACTGGTTCATTCAGCCCAAAAAGTACATTTGCGGGGAGCCACTGCTCTAGAGATGGGAATGCCTTTGTTGCTTCAGAAACAGCAAGAAATAGCATCTATCACAGAGCAGCTTATGACTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PD(21.8=60.5),PF122313=Rif1_N=FE(11.7=100)
A:
PF122313=Rif1_N=FE(8.7=100)
C2:
PF122313=Rif1_N=FE(17.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGCAGACGTTTCCCAC
R:
TCCCATCTCTAGAGCAGTGGC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]