BtaEX6009921 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019592 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr2:47825070-47832973:-
Coord C1 exon
chr2:47832647-47832973
Coord A exon
chr2:47830050-47830258
Coord C2 exon
chr2:47825070-47826278
Length
209 bp
Sequences
Splice sites
3' ss Seq
TTATATTTTTCATACTATAGGTG
3' ss Score
8.26
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GCGGTTCAGGACCATCCTCCTCCATAGCCATAGCTGGCATCAACCACCCTGCCATCACAAAGACAACATCTGTTCTTCAAGACGGCGTCATAGTCACCACCGCAGCTGGAAACCCACTGCAGAGTCAGCTGCCCATTGGGAGTGATTTTCCTTTTGTTGGCCAGGAGCACGCACTTCATTTTCCATCCAACAGCACTTCAAACAACCATCTTCCACACCCCTTGAACCCCAGCCTCCTCAGTTCTCTACCTATCTCTTTGCCAGTGAATCAACAGCATCTCCTAAACCAGAATCTATTAAATATCTTCCAGCCTTCAGCAGGAGAAG
Seq A exon
GTGACATGCCCTCAATAAACAGTACTTTGAATAACCATCAACTGACTCATCTACAGTCGCTGTTAAACAACAATCAGATGTTTCCTCCAAATCAGCAGCAGCAGCAACTTCTTCAGGGGTACCAGAATCTCCAGGCATTTCAAGGACAGTCCACAATTCCTTGCCCAGCTAACAATAACCCCATGGCTTGTCTGTTTCAGAATTTCCAG
Seq C2 exon
GTGAGAATGCAGGAAGATGCAGCTCTCCTAAACAAAAGAATAAGCACTCAGCCGGGGCTCACAGCACTTCCCGAAAATCCAAACACTACACTTCCACCTTTCCAAGACACCTCTTGTGAGTTGCAGTCGAGGATTGACCCATCTCTAGGTCAGCAGGTGAAGGATGGCCTCATCATGGGGGGCCAAGGCGATGCTTCCGTAGATGCTATTTACAAAGCAGTCGTGGATGCAGCCAGCAAAGGGATGCAGGTTGTCATCACCACTGCTGTCAACAGTACAACTCAGATCAGCCCCATTCCAGCTCTGAGTGCCATGAGTGCCTTCACTGCTTCCATCGGTGACCCATTAAGTCTCCCCAGTGCTGTCAGTGCGGTCATTCACGGACGAAACATGGGCAGTGTGGATCACGATGGGCGGCTGAGGAGTGCGAGAGGGGCTCGGCTGCCTAGCAGTCTGGACCACGGGAAGAACTCCAGCGAAGGAGATGGCTTTGAATATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019592-'10-14,'10-13,12-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=0.550 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0085512=PWWP=PU(46.3=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCTTCCACACCCCTTGA
R:
TGATGAGGCCATCCTTCACCT
Band lengths:
298-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]