GgaEX1035293 @ galGal4
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:HGNC:20444]
Coordinates
chr7:34182533-34188157:+
Coord C1 exon
chr7:34182533-34183561
Coord A exon
chr7:34185187-34185398
Coord C2 exon
chr7:34186949-34188157
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGTTTGAATTACAGGTG
3' ss Score
10.05
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GCAACAGCAAAATAACCCTTTGCCCTCAGTAACACAGATGACAGCCCCACCTGACCATTTGCCAAGCAATCAGTCAGAAAGCAACAGGGTTGAGACCCTTTTAAGCAACCCCCTGGGGAACCCTTTACCAAGCTTTTCAGGCACTGACACTACTTCTAACCCCCTGCTCCTCCCAGCTGTCTCTGGGGCCTCAGCATTAATGGCCTTGAATCCCCAGCTGGTGGGAGGTGTCCTGAACTCTGCGTCGGGCAACACCGCTAATCATCCAGAGGTTTCCATAGCCACCTCCTCCCAAGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGTCTGTCTCTACCCTGGGTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAACATATCTAATAATGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTG
Seq A exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
Seq C2 exon
GTGAGAATGCAGGAAGATGCTGCTGCCCTGAACAAAAGAATGATCACTCAGATGGGAATGGCACCAGTTCCTGAGAGCTCCAACGCTATGCTTCCTCCTTTCCAAGAAACATCTTGTGATTTGCAGCAAAGAACTGAACCATCTCTTGGTCAACAGGCAAAGGATAACCTCAATGTCGCTGCTCAGGGTGATACATCAGTGGATGCGATCTACAAAGCAGTCGTAGATGCTGCAAGCAAAGGAATGCAAGTAGTGATCACCACTGCCGTTAGCAGTACCACACAGATGAGTCCCATTCCAGCTTTGAGTGCCATGAGTGCCTTCACAGCCTCAATTGGTGACCCGCTAAATCTCTCTAGTGCTGTCAGTGCAGTAATCCATGGAAGAAACATTGCTGTTTCTGATCATGAAGGTAGGATAAGAAACACTAGAGGAACGCGAGTACTGAAGAATTCGGAGCATGGTAAAAATTCAAGTGAAGGGGATGGGTATGAATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'16-13,'16-12,19-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.789 C2=0.514
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0085512=PWWP=PU(46.3=9.4)
Main Skipping Isoform:
ENSGALT00000020351fB2243
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCACAGCTACTTAACCC
R:
TTGCATTCCTTTGCTTGCAGC
Band lengths:
293-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]