GgaEX1035293 @ galGal3
Exon Skipping
Gene
ENSGALG00000012449 | MBD5
Description
NA
Coordinates
chr7:36310136-36315760:+
Coord C1 exon
chr7:36310136-36311164
Coord A exon
chr7:36312790-36313001
Coord C2 exon
chr7:36314552-36315760
Length
212 bp
Sequences
Splice sites
3' ss Seq
TCCCTGTGTTTGAATTACAGGTG
3' ss Score
10.05
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GCAACAGCAAAATAACCCTTTGCCCTCAGTAACACAGATGACAGCCCCACCTGACCATTTGCCAAGCAATCAGTCAGAAAGCAACAGGGTTGAGACCCTTTTAAGCAACCCCCTGGGGAACCCTTTACCAAGCTTTTCAGGCACTGACACTACTTCTAACCCCCTGCTCCTCCCAGCTGTCTCTGGGGCCTCAGCATTAATGGCCTTGAATCCCCAGCTGGTGGGAGGTGTCCTGAACTCTGCGTCGGGCAACACCGCTAATCATCCAGAGGTTTCCATAGCCACCTCCTCCCAAGCAACCACTACCACAACCACTACATCATCAGCAGTGGCAGCACTGTCTGTCTCTACCCTGGGTGGTGGGACAGCAGTGGTGTCAATGGCAGAAACATTGCTGAACATATCTAATAATGCTGGGAATACATCTGGTCCAGCTAAACTCAACAGTAACTCTGTGGTGCCACAGCTACTTAACCCTCTACTGGGGACAGGTCTGCTTG
Seq A exon
GTGACATGTCATCTATAAACACTACTTTGAATAACCATCAACTGAGTCATCTCCAGTCACTATTAAACAACAATCAGATGTTTCCTTCAAATCAGCAGCAACAGCACCTTCTCCAGGGGTATCAGAACATGCAGGGCTTTCAAGGCCAGCCCCCAATTCCTGGCCCAGCTAACAACCCAAACCCCATGGCATGTCTGTTCCAAAATTTCCAG
Seq C2 exon
GTGAGAATGCAGGAAGATGCTGCTGCCCTGAACAAAAGAATGATCACTCAGATGGGAATGGCACCAGTTCCTGAGAGCTCCAACGCTATGCTTCCTCCTTTCCAAGAAACATCTTGTGATTTGCAGCAAAGAACTGAACCATCTCTTGGTCAACAGGCAAAGGATAACCTCAATGTCGCTGCTCAGGGTGATACATCAGTGGATGCGATCTACAAAGCAGTCGTAGATGCTGCAAGCAAAGGAATGCAAGTAGTGATCACCACTGCCGTTAGCAGTACCACACAGATGAGTCCCATTCCAGCTTTGAGTGCCATGAGTGCCTTCACAGCCTCAATTGGTGACCCGCTAAATCTCTCTAGTGCTGTCAGTGCAGTAATCCATGGAAGAAACATTGCTGTTTCTGATCATGAAGGTAGGATAAGAAACACTAGAGGAACGCGAGTACTGAAGAATTCGGAGCATGGTAAAAATTCAAGTGAAGGGGATGGGTATGAATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012449-'8-9,'8-8,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.789 C2=0.526
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0085512=PWWP=PU(46.3=9.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCACAGCTACTTAACCC
R:
TTGCATTCCTTTGCTTGCAGC
Band lengths:
293-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]