BtaEX6009926 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48395438-48412130:-
Coord C1 exon
chr2:48411976-48412130
Coord A exon
chr2:48397488-48397631
Coord C2 exon
chr2:48395438-48395581
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATACTATTATTGTTTGTAGGAC
3' ss Score
5.69
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CTACGTCGAATCCAGTAACTCCTAAGCCTCCCTATTACAACATCTTGCTCTATTCTTTGGTGCCACTTATGTTAATTGCGGGGATTGTCATTTGTGCATTTTGGGTGTACAGACATCATAAGATGGCTTACCCTCCTGTGCTCGTTCCAACTCAA
Seq A exon
GACCCAGGACCACCCCCACCTTCTCCATTACTAGGTTTGAAGCCATTACAGTTACTAGAAGTGAAAGCAAGAGGAAGATTTGGTTGTGTGTGGAAAGCCCAGTTACTCAATGAATATGTGGCTGTGAAAATATTTCCAATACAG
Seq C2 exon
GATAAACAGTCATGGCAGAATGAATATGAAGTCTATAGTTTGCCTGGAATGAAGCATGAGAACATACTGCAGTTCATTGGTGCAGAGAAACGAGGCACCAGTGTTGATGTGGATCTTTGGCTAATCACAGCATTTCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114-'5-9,'5-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(11.1=66.7)
C2:
PF0006920=Pkinase=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTAACTCCTAAGCCTCCCT
R:
TCAACACTGGTGCCTCGTTTC
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]