DreEX0011040 @ danRer10
Exon Skipping
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:872512-880335:+
Coord C1 exon
chr6:872512-872666
Coord A exon
chr6:878083-878226
Coord C2 exon
chr6:880192-880335
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATATATGTTCTGTGTTCAGGAT
3' ss Score
9.64
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
CCACGTTGAACCCCGTCCCCCCGAAGCCGGACTTGTTTCCCACGCTGCTCTACTCTCTGCTGCCCATCATGGCGGTCGCCGTAATTCTCTTCATCTCCTTCTGGATGTACCGTCACCTGAAGTTGACGTACCCGCCGCTGCTCGTGCCGTCACAG
Seq A exon
GATCCAGGTCTGACTCCTCCGTCTCCTCTGCTGGGTCAGAAGCCTCTGCAGCTGCTGGAGCTGAAGGCCAGAGGACGCTTCGGCTGCGTGTGGAAAGCTCAGCTGCTCAGTGAAGCCGTGGCGGTCAAGATCTTCCCTGTCCAG
Seq C2 exon
AATAAGCAGTCCTGGCAGAATGAATATGAGATTTATAATGCGAGCGGAATGAAACATGAAAACCTCCTTCACTTCATCGGAGCAGAAAAACGTGGAAATGGAGTTGACATAGAGCTGTGGCTGATCACAACCTACCATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-'2-5,'2-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(11.1=65.3)
C2:
PF0006920=Pkinase=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCCACGCTGCTCTACTC
R:
TAGGTTGTGATCAGCCACAGC
Band lengths:
255-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]