RnoEX0006475 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33006643-33023412:+
Coord C1 exon
chr3:33006643-33006797
Coord A exon
chr3:33021453-33021596
Coord C2 exon
chr3:33023269-33023412
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTATTATTATTTATCTCTAGGAC
3' ss Score
11.08
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCACATCAAATCCTGTTACCCCGAAACCACCCTACTACAACATCCTGCTGTATTCCTTGGTACCACTTATGTTAATTGCGGGGATTGTCATTTGTGCGTTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAG
Seq A exon
GACCCTGGACCACCTCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTATTGGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAGTATGTGGCTGTCAAAATATTTCCGATACAG
Seq C2 exon
GACAAACAGTCCTGGCAGAATGAATATGAAGTCTATAGTTTACCTGGTATGAAGCATGAAAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCACCAGTGTTGATGTGGACCTGTGGCTAATCACGGCTTTTCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334-'4-11,'4-10,8-11
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(11.1=66.7)
C2:
PF0006920=Pkinase=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCGAAACCACCCTACTACA
R:
CACATCAACACTGGTGCCTCT
Band lengths:
248-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]