GgaEX1006205 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36163131-36175522:+
Coord C1 exon
chr7:36163131-36163285
Coord A exon
chr7:36174167-36174310
Coord C2 exon
chr7:36175379-36175522
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTACCTAATTTCAGGAT
3' ss Score
7.74
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CAACTTCCAATCCAGTCACACCGAAGCCACCTCTATTCAATACCTTGCTTTATTCATTGGTGCCTATAATGGGAATTGCAGTGATTGTGCTCTTTTCATTTTGGATGTACAGACATCACAAGCTAGCATATCCTCCAGTACTTGTTCCAACCCAA
Seq A exon
GATCCTGGACCACCACCGCCTTCACCATTGATGGGTTTGAAGCCACTGCAGTTGCTAGAGATCAAAGCCAGGGGACGATTTGGGTGTGTGTGGAAAGCTCAGCTGCTGAATGAGTATGTTGCAGTCAAAATATTCCCTATCCAG
Seq C2 exon
GACAAACAGTCGTGGCAGAATGAATATGAAATTTACAGCCTGCCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCATTGATGTGGATCTCTGGTTAATTACAGCTTTTCACGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444-'5-8,'5-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(11.1=66.7)
C2:
PF0006920=Pkinase=FE(16.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACACCGAAGCCACCTCTAT
R:
ATCCACATCAATGCTGGTGCC
Band lengths:
254-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]