MmuEX6101116 @ mm10
Exon Skipping
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48873319-48892272:+
Coord C1 exon
chr2:48873319-48873473
Coord A exon
chr2:48890298-48890441
Coord C2 exon
chr2:48892129-48892272
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTATTATTATTTATCTCTAGGAC
3' ss Score
11.08
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCACTTCAAATCCTGTTACACCGAAGCCACCCTATTACAACATTCTGCTGTATTCCTTGGTACCACTAATGTTAATTGCAGGAATTGTCATTTGTGCATTTTGGGTGTACAGACATCACAAGATGGCCTACCCTCCTGTACTTGTTCCTACTCAA
Seq A exon
GACCCAGGACCACCCCCACCTTCCCCATTACTAGGGTTGAAGCCATTGCAGCTGTTAGAAGTGAAAGCAAGGGGAAGATTTGGTTGTGTCTGGAAAGCCCAGTTGCTCAATGAATATGTGGCTGTCAAAATATTTCCAATACAG
Seq C2 exon
GACAAACAGTCCTGGCAGAATGAATATGAAGTCTATAGTCTACCTGGAATGAAGCATGAGAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCACCAGTGTGGATGTGGACCTGTGGCTAATCACAGCATTTCATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155-'6-20,'6-9,8-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PU(11.1=66.7)
C2:
PF0006920=Pkinase=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACACCGAAGCCACCCTA
R:
CATCCACACTGGTGCCTCTTT
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types