BtaEX6009928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018114 | ACVR2A
Description
Bos taurus activin A receptor, type IIA (ACVR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174227]
Coordinates
chr2:48392322-48395581:-
Coord C1 exon
chr2:48395438-48395581
Coord A exon
chr2:48394083-48394228
Coord C2 exon
chr2:48392322-48392436
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCCCCTTTCTTTAGGGT
3' ss Score
12.63
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
GATAAACAGTCATGGCAGAATGAATATGAAGTCTATAGTTTGCCTGGAATGAAGCATGAGAACATACTGCAGTTCATTGGTGCAGAGAAACGAGGCACCAGTGTTGATGTGGATCTTTGGCTAATCACAGCATTTCATGAAAAG
Seq A exon
GGTTCACTATCAGACTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAATTGTGTCATATTGCAGAAACCATGGCTAGAGGATTGGCATATTTACATGAGGATATACCTGGCCTAAAAGATGGCCACAAACCCGCCATATCTCACAG
Seq C2 exon
GGACATCAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCCTGCATTGCTGACTTTGGGTTGGCGTTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGATACTCATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018114-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
PF0006920=Pkinase=FE(16.7=100)
C2:
PF0006920=Pkinase=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCATGGCAGAATGAATATGA
R:
TCCATGAGTATCACCTGCAGACT
Band lengths:
251-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]