RnoEX0006477 @ rn6
Exon Skipping
Gene
ENSRNOG00000005334 | Acvr2a
Description
activin A receptor type 2A [Source:RGD Symbol;Acc:70911]
Coordinates
chr3:33023269-33026356:+
Coord C1 exon
chr3:33023269-33023412
Coord A exon
chr3:33024646-33024791
Coord C2 exon
chr3:33026242-33026356
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCCCACCTCTCCTTCTTTAGGGC
3' ss Score
11.67
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GACAAACAGTCCTGGCAGAATGAATATGAAGTCTATAGTTTACCTGGTATGAAGCATGAAAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCACCAGTGTTGATGTGGACCTGTGGCTAATCACGGCTTTTCATGAAAAG
Seq A exon
GGCTCACTGTCAGACTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAACTTTGTCATATTGCAGAAACCATGGCTAGAGGATTGGCATATTTACATGAGGATATACCTGGCTTAAAAGATGGCCACAAGCCTGCAATATCTCACAG
Seq C2 exon
GGACATAAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCTTGCATTGCTGACTTTGGGTTGGCCTTAAAGTTTGAGGCTGGCAAGTCTGCAGGTGACACCCATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005334_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
PF0006920=Pkinase=FE(16.7=100)
C2:
PF0006920=Pkinase=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGTCCTGGCAGAATGA
R:
ATGGGTGTCACCTGCAGACTT
Band lengths:
252-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]