GgaEX6043207 @ galGal3
Exon Skipping
Gene
ENSGALG00000012444 | AVR2A_CHICK
Description
NA
Coordinates
chr7:36175379-36177460:+
Coord C1 exon
chr7:36175379-36175522
Coord A exon
chr7:36176749-36176894
Coord C2 exon
chr7:36177346-36177460
Length
146 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTTGCTACGCAGGGT
3' ss Score
9.02
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GACAAACAGTCGTGGCAGAATGAATATGAAATTTACAGCCTGCCTGGAATGAAGCATGACAATATTTTACAGTTCATCGGTGCAGAGAAGCGAGGCACCAGCATTGATGTGGATCTCTGGTTAATTACAGCTTTTCACGAAAAG
Seq A exon
GGTTCATTAACTGACTTCCTCAAGGCTAACGTGGTTTCCTGGAATGAGCTGTGTCACATTGCTCAGACTATGGCTCGAGGCTTGGCTTATCTCCATGAGGATATACCAGGGCTAAAAGACGGACATAAACCCGCCATCTCACACAG
Seq C2 exon
GGACATCAAAAGCAAGAATGTGCTGCTGAAAAACAACCTTACAGCTTGCATTGCTGATTTTGGTCTAGCTTTAAAGTTTGAGGCTGGAAAATCTGCAGGAGATACACATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012444-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
PF0006920=Pkinase=FE(16.6=100)
C2:
PF0006920=Pkinase=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGTCGTGGCAGAATGA
R:
CCTGCAGATTTTCCAGCCTCA
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]