DreEX0011041 @ danRer10
Exon Skipping
Gene
ENSDARG00000104700 | acvr2ab
Description
activin A receptor, type IIAb [Source:ZFIN;Acc:ZDB-GENE-120215-23]
Coordinates
chr6:880192-881380:+
Coord C1 exon
chr6:880192-880335
Coord A exon
chr6:880772-880917
Coord C2 exon
chr6:881266-881380
Length
146 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTCTGTGTTCAGGGT
3' ss Score
10.46
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATAAGCAGTCCTGGCAGAATGAATATGAGATTTATAATGCGAGCGGAATGAAACATGAAAACCTCCTTCACTTCATCGGAGCAGAAAAACGTGGAAATGGAGTTGACATAGAGCTGTGGCTGATCACAACCTACCATGAGAAG
Seq A exon
GGTTCACTGACAGATTTCCTGAAGGCGAATGTGTTGTCGTGGAATGAGCTGTGTCTGATCGCGCAGACGTTTGTGCGCGGTTTGGCTTATTTACACGAGGACATTCCCAACCTGAAGGATGGACACAAGCCTGCTATAGCACACAG
Seq C2 exon
AGACATCAAGAGTAAGAATGTGCTGCTGAAGAGTGATCTAACCGCCTGCATCGCTGACTTTGGCCTGGCGCTCAAGTTTGAAGCAGGAAAATCAACAGGTGACACACACGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104700-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.7=100)
A:
PF0006920=Pkinase=FE(17.0=100)
C2:
PF0006920=Pkinase=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGTCCTGGCAGAATGAA
R:
CCGTGTGTGTCACCTGTTGAT
Band lengths:
252-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]