MmuEX6101114 @ mm10
Exon Skipping
Gene
ENSMUSG00000052155 | Acvr2a
Description
activin receptor IIA [Source:MGI Symbol;Acc:MGI:102806]
Coordinates
chr2:48892129-48894780:+
Coord C1 exon
chr2:48892129-48892272
Coord A exon
chr2:48893507-48893652
Coord C2 exon
chr2:48894666-48894780
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCCACCTCTCCTTTCTTTAGGGC
3' ss Score
11.73
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GACAAACAGTCCTGGCAGAATGAATATGAAGTCTATAGTCTACCTGGAATGAAGCATGAGAACATACTACAGTTCATTGGTGCAGAGAAAAGAGGCACCAGTGTGGATGTGGACCTGTGGCTAATCACAGCATTTCATGAAAAG
Seq A exon
GGCTCACTGTCAGACTTTCTTAAGGCTAATGTGGTCTCTTGGAATGAACTTTGTCATATTGCAGAAACCATGGCTAGAGGATTGGCATATTTACATGAGGATATACCTGGCTTAAAAGATGGCCACAAGCCTGCAATCTCTCACAG
Seq C2 exon
GGACATCAAAAGTAAAAATGTGCTGTTGAAAAACAATCTGACAGCTTGCATTGCTGACTTTGGGTTGGCCTTAAAGTTCGAGGCTGGCAAGTCTGCAGGTGACACCCATGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052155-'9-17,'9-14,10-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(16.3=100)
A:
PF0006920=Pkinase=FE(16.7=100)
C2:
PF0006920=Pkinase=FE(13.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGTCCTGGCAGAATGA
R:
ATGGGTGTCACCTGCAGACTT
Band lengths:
252-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types