BtaEX6009933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012615 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr2:52395882-52406207:+
Coord C1 exon
chr2:52395882-52397851
Coord A exon
chr2:52399450-52399630
Coord C2 exon
chr2:52405630-52406207
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACTATGTGATTATGTCACAGGGA
3' ss Score
5.9
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCCACAGTAGTTCTTACACTCCAAACAGCTTCTCATCTGAGGAGCTCCAGGCTGAGCCTTTGGACCTGTCATTACCAAAACAAATGAAAGAACCCAAAAGTATTATAGCCACAAAGAGCAAAACGAAGGTTGGCAGCATAAATTTAGACCACAACAGTGTTTCTTCGTCATCTGAAAACTCAGATGAGCCTCTGAACTTGACTTTTATCAAGAAGGAGTTTTCAAATTCAAATAATCTGGACAGCAAAAGTGCTAACCCAGTGTTCGGCATGAACCCCTTTAGTGCCAAACCTCTCTACACAGCTCTTCCTCCACAAAGCGCGTTCCCCCCGGCCACTTTCATGCCACCAGTCCAGACGAGTATCCCTGGACTGCGACCATACCCAGGACTGGATCAGATGAGCTTCCTACCACACATGGCCTATACTTACCCAACTGGAGCAGCTACTTTTGCTGACATGCAGCAAAGGAGAAAGTACCAGCGGAAACCAGGATTTCAG
Seq A exon
GGAGAATTGCTTGATGGAGCACAAGACTACATGTCAGGCCTAGATGACATGACAGACTCCGACTCCTGTCTGTCTCGAAAGAAGATCAAGAAGACAGAGAGTGGCATGTATGCATGTGATTTGTGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq C2 exon
GAAAAAGACCACATCAGTGTCAGATTTGTAAGAAAGCGTTTAAACACAAGCACCACCTTATCGAGCACTCGAGGCTTCACTCAGGCGAGAAGCCCTATCAGTGTGATAAATGTGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTATTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCGGCGGAGCGCGAGGCGCGCGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACTCCTCAGGGGTACTCTGACTCGGAGGAGCGGGAGAGTATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAAGGCGAGGATGGTTATGGCAAGCTGGGGAGACAGGATGGCGATGAGGAGTTCGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAAACGATACGAGATGAAGAGGAGACTGGAGATCACTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012615-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.131 C2=0.766
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
A:
PF134651=zf-H2C2_2=PU(38.5=16.4)
C2:
PF134651=zf-H2C2_2=PD(57.7=7.8),PF134651=zf-H2C2_2=WD(100=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGAGTATCCCTGGACTGC
R:
CACACTGATAGGGCTTCTCGC
Band lengths:
251-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]