GgaEX1065119 @ galGal4
Exon Skipping
Gene
ENSGALG00000012440 | ZEB2
Description
zinc finger E-box binding homeobox 2 [Source:HGNC Symbol;Acc:HGNC:14881]
Coordinates
chr7:32812269-32825889:-
Coord C1 exon
chr7:32823920-32825889
Coord A exon
chr7:32821146-32821326
Coord C2 exon
chr7:32812269-32812846
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGATGGTTGTCCTCTCACAGGGA
3' ss Score
8.24
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACTCCCATAGTAGTTCTTACACTCCAAACAGTTTCTCTTCTGAGGAGCTTCAGGCTGAGCCTTTGGACTTGTCTTTACCAAAACAAATGAAGGAACCCAAAAGTATTATAGCCACAAAGAACAAAACGAAATCTAATAGTGTAAATTTAGAACACAACAGTGTTTCTTCATCATCTGAAAACTCAGATGAGCCACTGAACTTGACTTTTATCAAGAAGGAGTTTTCTAATTCAAATAACCTGGATAAAAGCACTAACCCAGTATTTGGTATGAACCCATTCAGTGCCAAACCTTTATACACAACACTTCCACCACAAAGCGCATTTCCCCCAGCCACTTTTATGCCACCAGTCCAGACCAGTATTCCTGGGTTGCGACCATACCCAGGACTAGATCAGATGAGCTTCCTACCACATATGGCCTACACCTACCCAACTGGAGCAGCTACTTTTGCTGACATGCAGCAAAGGAGAAAGTACCAGCGGAAACAAGGATTTCAG
Seq A exon
GGAGACTTGCTTGATGGAACCCCAGACTACATGTCCGGCCTCGACGACATGACAGACTCCGACTCCTGTCTGTCCCGAAAGAAGATCAAGAAGACGGAAAGTGGCATGTATGCGTGTGACTTATGTGACAAGACATTCCAGAAGAGCAGTTCCCTGCTGCGACACAAATATGAGCACACAG
Seq C2 exon
GAAAAAGACCACACCAGTGTCAGATTTGCAAGAAAGCATTTAAACACAAGCATCACCTGATTGAGCATTCACGCCTGCACTCTGGGGAAAAGCCCTACCAGTGTGATAAATGTGGCAAGCGCTTCTCCCACTCCGGGTCTTACTCACAGCACATGAATCACAGGTATTCCTACTGTAAGAGAGAGGCAGAGGAGAGGGAAGCGGCCGAGCGGGAAGCCCGTGAAAAGGGTCACTTAGAGCCCAACGAGCTACTGATGAACCGGGCCTATTTACAGAGCATTACTCCCCAGGGGTACTCTGACTCAGAGGAGAGAGAGAGCATGCCGAGAGACGGCGAGAGCGAAAAGGAGCACGAGAAGGAAGGGGAAGATGGGTATGAGAAGCTGGGAAGGCAGGATGGGGATGAGGAGTTTGAGGAAGAAGAGGAAGAGAGCGAAAATAAAAGTATGGATACGGATCCAGACACGATAAGAGATGAAGAGGAGACTGGTGATCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012440-'9-16,'9-15,11-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.164 C2=0.766
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
A:
PF134651=zf-H2C2_2=PU(38.5=16.4)
C2:
PF134651=zf-H2C2_2=PD(57.7=7.8),PF134651=zf-H2C2_2=WD(100=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCCAGCCACTTTTATGC
R:
AGGCGTGAATGCTCAATCAGG
Band lengths:
252-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]