MmuEX6101111 @ mm9
Exon Skipping
Gene
ENSMUSG00000026872 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:MGI Symbol;Acc:MGI:1344407]
Coordinates
chr2:44839154-44853515:-
Coord C1 exon
chr2:44851546-44853515
Coord A exon
chr2:44849999-44850179
Coord C2 exon
chr2:44839154-44844673
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACTATGTGATTATATCACAGGGA
3' ss Score
5.14
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCCACAGTAGCTCGTACACTCCAAATAGCTTCTCTTCCGAGGAGCTGCAGGCTGAGCCGTTGGACCTGTCATTACCAAAACAAATGAGAGAACCCAAAGGTATTATAGCCACAAAGAACAAAACAAAAGCTACTAGCATAAACTTAGACCACAACAGTGTTTCTTCATCGTCTGAGAATTCAGATGAGCCTCTGAATTTGACTTTTATCAAGAAAGAGTTTTCAAATTCTAATAACCTGGACAATAAAAGCAACAACCCTGTGTTCGGCATGAACCCATTTAGTGCCAAGCCTTTATACACCCCTCTTCCACCACAGAGCGCATTTCCCCCTGCCACTTTCATGCCACCAGTCCAGACCAGCATCCCCGGGCTACGACCATACCCAGGACTGGATCAGATGAGCTTCCTACCGCATATGGCCTATACCTACCCAACGGGAGCAGCTACCTTTGCTGATATGCAGCAAAGGAGGAAATACCAGAGGAAACAAGGATTTCAG
Seq A exon
GGAGACTTGCTGGATGGAGCACAAGACTACATGTCAGGCCTAGATGACATGACAGACTCCGATTCCTGTCTGTCTCGAAAGAAGATAAAGAAGACAGAAAGTGGCATGTATGCATGTGACTTATGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq C2 exon
GAAAGAGACCACACCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACACCACCTTATCGAGCACTCGAGGCTGCACTCGGGCGAGAAGCCCTATCAGTGTGACAAATGTGGCAAGCGCTTCTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTACTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCAGCCGAGCGCGAGGCGCGAGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACCTGCAGAGCATCACCCCTCAGGGGTACTCTGACTCGGAGGAGAGGGAGAGCATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAGGGCGAGGAGGGTTATGGGAAGCTGCGGAGAAGGGACGGCGACGAGGAGGAAGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAAACGATACGGGATGAGGAAGAGACTGGGGATCACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026872-'20-25,'20-23,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.483 A=0.123 C2=0.777
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
A:
PF134651=zf-H2C2_2=PU(38.5=16.4)
C2:
PF134651=zf-H2C2_2=PD(57.7=7.7),PF134651=zf-H2C2_2=WD(100=13.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGACCATACCCAGGACT
R:
GAGAAGCGCTTGCCACATTTG
Band lengths:
257-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: