DreEX0086352 @ danRer10
Exon Skipping
Gene
ENSDARG00000078416 | zeb2b
Description
zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
Coordinates
chr6:1151183-1166680:-
Coord C1 exon
chr6:1164693-1166680
Coord A exon
chr6:1159953-1160055
Coord C2 exon
chr6:1151183-1151379
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACGCCGCTGTCTCTTTCCAGAGC
3' ss Score
10.68
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCTCTTACACGCCCAACAGCTTCACCTCCGAGGACCTGCAGGCCGAGCCTCTTGACCTCTCCTTGCCAAAGCTCATGAAGGAGCCAAAGCACATCTTGACTGTGAAAAGCCGACTTAAGCTCAACAGTGGCCCCATGGACCACAATCACGTAGCGACACCCCGCGAGCATGCGGACGAGCCACTCAACTTGGCGTATCTCTCCAAGAAGGAGTTCGGCAGCCCCAATGCAAACAGCAATCTGGACAAAAGCTCTAGTCCTATGTTTGGTCTAAACCCGTTCGCTGCCAAACCAATGTACACCTCCCTGCCACCCCAAAGTGCATTCCCGCCGCCTACATTCATGCCCCCAGTGCAGGCCAGCCTCCCAGGGCTCAGACCCTATCCCAGTCTCGACCAGATAAGCTTTTTGCCACACATGGCCTACACGTACGCGGCAGGGGCAGCCAGCTTCGCAGAGATGCAGCAAAGGAGAAAATATCAGCGGAAACCAGGGTTCCAG
Seq A exon
AGCGAGCTTCTTGACGGGCCGGCAGATTATCTGAGCAGTCTAGATGATATGGCCGACCCCGAGGCCTGTCTGTCCAGGAAGAAGATTAAGAAAACAGAAAGTG
Seq C2 exon
GTAAGCGGCCGCACCAGTGTCAGATCTGCAAGAAAGCGTTCAAACACAAACACCACCTAATCGAACACAGCCGCCTGCACTCCGGGGAGAAGCCCTACCAGTGTGATAAATGCGGGAAGCGCTTCTCACACTCGGGCTCGTACTCTCAGCACATGAACCACAGATACTCATACTGCAAGCGGGAGGCAGAGGAGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078416_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.468 A=0.205 C2=0.236
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.5)
A:
PF134651=zf-H2C2_2=PU(27.3=17.1)
C2:
PF134651=zf-H2C2_2=PD(57.7=22.7),PF134651=zf-H2C2_2=WD(100=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACATGGCCTACACGTAC
R:
CATGTGCTGAGAGTACGAGCC
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]