RnoEX0100922 @ rn6
Exon Skipping
Gene
ENSRNOG00000004677 | Zeb2
Description
zinc finger E-box binding homeobox 2 [Source:RGD Symbol;Acc:1307272]
Coordinates
chr3:29862473-29871993:-
Coord C1 exon
chr3:29870024-29871993
Coord A exon
chr3:29868356-29868536
Coord C2 exon
chr3:29862473-29863053
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACTGTGTGATTGTATCACAGGGA
3' ss Score
7.42
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCCACAGTAGCTCGTACACTCCAAATAGCTTCTCTTCCGAGGAGCTGCAGGCTGAGCCGTTGGACCTGTCATTACCAAAACAAATGAGAGAGCCCAAAAGTATTATAGCCACAAAGAACAAGACGAAAGCTACTAGCATAAGTTTAGACCACAACAGTGTTTCTTCATCCTCTGAAAACTCAGATGAACCTCTGAATTTGACTTTTATCAAGAAAGAGTTTTCAAATTCTAATAACCTGGACAATAAAAGCACTAACCCTGTGTTCGGCATGAACCCATTTAGTGCCAAGCCTTTATACACAGCTCTTCCACCACAGAGCGCATTTCCCCCTGCCACTTTCATGCCACCAGTCCAGACCAGCATCCCCGGGCTACGACCATACCCAGGGCTGGATCAGATGAGCTTCCTACCACATATGGCCTATACCTACCCAACGGGAGCAGCTACCTTTGCTGATATGCAGCAAAGGAGGAAATACCAGCGGAAACAAGGATTTCAG
Seq A exon
GGAGAATTGCTTGATGGAGCACAAGACTACATGTCGGGCCTAGATGACTTGACAGACTCCGATTCCTGTCTGTCTCGAAAGAAGATAAAGAAGACAGAAAGTGGCATGTATGCATGTGACTTATGTGACAAGACATTCCAGAAAAGCAGTTCCCTTCTGCGACATAAATACGAACACACAG
Seq C2 exon
GAAAGAGACCACACCAGTGTCAGATTTGTAAGAAAGCGTTCAAACACAAACACCACCTTATCGAGCACTCGAGGCTGCACTCGGGCGAGAAGCCCTATCAGTGTGACAAATGTGGCAAGCGCTTTTCACACTCGGGCTCCTACTCGCAGCACATGAATCACAGGTACTCCTACTGCAAGCGGGAGGCGGAGGAGCGGGAAGCGGCCGAGCGCGAGGCACGAGAGAAAGGGCACTTGGAACCCACCGAGCTGCTGATGAACCGGGCTTACTTGCAGAGCATCACCCCTCAGGGGTACTCTGACTCGGAGGAGAGGGAGAGCATGCCGAGGGATGGCGAGAGCGAGAAGGAGCACGAGAAGGAGGGCGAGGAGGGCTATGGGAAGCTGCGGAGAAGGGACGGCGACGAGGAGGAAGAGGAGGAAGAGGAAGAAAGTGAAAATAAAAGTATGGATACGGATCCCGAGACGATACGGGATGAGGAGGAGACTGGGGATCACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004677-'46-30,'46-28,47-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.071 C2=0.772
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(57.7=2.3),PF0004624=Homeobox=WD(100=7.8)
A:
PF134651=zf-H2C2_2=PU(38.5=16.4)
C2:
PF134651=zf-H2C2_2=PD(57.7=7.7),PF134651=zf-H2C2_2=WD(100=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGGATCAGATGAGCTT
R:
GTGAAAAGCGCTTGCCACATT
Band lengths:
244-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]