BtaEX6009941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52825435-52891868:+
Coord C1 exon
chr2:52825435-52825767
Coord A exon
chr2:52891004-52891074
Coord C2 exon
chr2:52891777-52891868
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTAAATTTTCTTTAGGTT
3' ss Score
10.59
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
ATTCATGCCCAAGCACAAAGCAGCCCATTTACAGAAGATACTCAGCCTTAAAGAAAATGGTGGCAATGCTCCATCCACGGCCCTTCCTTTCCAACAGCAGCTGAGAGGTTCTGAGAATTTATTGAAGAGTTTTGATTCAAAGTCTGGACCCTGTGATGCTGCACAACAAGAAAGCCTGGGTTGCTCAGTAAGACAGGCGTCATACTTGAAAACATTCAACTCCTCAGATGATTCAAGCACACATCATGGGGAACATAAACAAAATCGGTGTGACGTTTTGGCTGAAGCTGATGATCAGCAAAGACCATTACATATTGTCTGGCCTCACAGGTG
Seq A exon
GTTGGAAGCTGTGTATTGTGGGTGTTACCCACTTTGTCCCAAAGATTTGGTTTATCCTGAAATATTTCCAG
Seq C2 exon
CTGAGTATCTGTATTCTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTACAAGAAAACATCTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132-'15-20,'15-19,19-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAGCACACATCATGGGGA
R:
TGGTCTCTTGCAGAAATTCTGGA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]