GgaEX1027679 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34745716-34751180:-
Coord C1 exon
chr7:34751036-34751180
Coord A exon
chr7:34746524-34746594
Coord C2 exon
chr7:34745716-34745807
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTTTTAACCTTCAGGGT
3' ss Score
9.33
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
ATATATTTGCAGAGGCCAAAAAGGCGTTGGGATCTTCTGTCTTGCACTGGGGGTACTTACCCAGCAAAGATGACTATTTCCAAGCCCTGTGCATGGCCGATGTTGTCATCTCAACAGCTAAACACGAATTCTTTGGAGTGGCAAT
Seq A exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
Seq C2 exon
CTGAATATCTGTATTCTACACCTGAACAGCTTTTTAAAAGGCTTCAGAATTTCTGCAAGAGACCAGATATTGTAAGGAAACATCTCTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'18-23,'18-22,20-23=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(34.5=100)
A:
PF0053415=Glycos_transf_1=FE(17.3=100)
C2:
PF0053415=Glycos_transf_1=PD(15.8=71.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGTTGGGATCTTCTGTCT
R:
AGCCTTTTAAAAAGCTGTTCAGGTG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]