GgaEX1027679 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32617757-32635235:-
Coord C1 exon
chr7:32635126-32635235
Coord A exon
chr7:32626731-32626801
Coord C2 exon
chr7:32617757-32618891
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGCTTGCTTTTAACCTTCAGGGT
3' ss Score
9.33
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GGAACACGACAAAGATCCTGAAACTTTCTTTAAAGTGCTGCTGAAACTGAAGGAGCAGGAGCTACCTTTTCACGTGTCCGTCCTCGGGGAGACTTTCACTGATGTTCCAG
Seq A exon
GGTGGAAGCGGTGCATTGTGGCTGTTACCCGTTGTGTCCCAAGGCCTTGGTGTACCCGGAGATCTTCCCAG
Seq C2 exon
GGCGAGATGGCTGGCTTTTCCTGGGCAGCGCTCCGTGGTAAATTCAGGTCTCTGCTCGCAGCAGAACCGAGGGAAGATTTGTGACAGATGGGGCTAAGTCACAAACTTGCAGCCTCAGGCAGAATTGTGGAAGTTTCCAGAGTGTGCCCATATTTACCTGATCAGAGAGAAAAGAAAATCTGCAGAGGAAGCCGAGCCTGGCTGCTTGTCATAGCTGACACAGAGCCATCTGCCACAAACCTGTGGCGGCTTCAGATCTCCAATCCCTGCCACCACCCCAGCTCAAATTAAATACAGATTCTTAGAGACGTTATGATGGTTACACATGTCCTCGGCATCACATGCAGGAGACTGTTCAAAAAAAATATGTGGCCTGTTGTATAACCGCACTCATGTATCCCATATGTGGTGCCACATTGAATTTCCGGTTGAATCTGTTTTTATCCTTTGTACTGGATGACATGGTGCCTGAATTCTTTCTTTTCGCCGACACGGTGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX1-5/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(26.6=100)
A:
PF0053415=Glycos_transf_1=FE(17.3=100)
C2:
NO
Main Skipping Isoform:
ENSGALT00000020306fB8090
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCTTTTCACGTGTCCG
R:
CCTGAGGCTGCAAGTTTGTGA
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]