MmuEX0022059 @ mm10
Exon Skipping
Gene
ENSMUSG00000036890 | Gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2444269]
Coordinates
chr2:44570419-44575587:-
Coord C1 exon
chr2:44575443-44575587
Coord A exon
chr2:44571213-44571283
Coord C2 exon
chr2:44570419-44570510
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGACATTTCTGCAGGTT
3' ss Score
9.73
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
ATATATTTTCAGAAGCCAAAAAGGCACTGGGCTCTTCAGTCTTGCACTGGGGCTACTTACCCCGTAAAGAAGACTATTTCCGCGTACTGTGCATGGCTGACGTTGTCATCTCAACAGCCAAGCATGAATTCTTTGGAGTAGCAAT
Seq A exon
GTTGGAAGCTGTGTACTGTGGCTGCTACCCACTCTGTCCCAAAGCCTTGGTCTATCCTGAGATCTTTCCAG
Seq C2 exon
CTGAGTATCTGTATTCCACACCTGAACAGCTTTCAAAACGGCTCAAGAGTTTCTGCAAGAGGCCAGATATTATAAGAAAACATCTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036890_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(31.4=100)
A:
PF0053415=Glycos_transf_1=FE(15.7=100)
C2:
PF0053415=Glycos_transf_1=FE(19.6=100)
Main Skipping Isoform:
ENSMUST00000112810fB1896
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCTCTTCAGTCTTGCAC
R:
TGCAGAAACTCTTGAGCCGTT
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types