DreEX6036471 @ danRer10
Exon Skipping
Gene
ENSDARG00000020642 | gtdc1
Description
glycosyltransferase-like domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050417-8]
Coordinates
chr9:26091628-26098225:+
Coord C1 exon
chr9:26091628-26091772
Coord A exon
chr9:26097738-26097808
Coord C2 exon
chr9:26098134-26098225
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCATAAATCTTTTCTTTCAGGTT
3' ss Score
11.04
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
ACATCTTTTCTGAAGCCAAAGAACAGTTGGTTGACCACATCCAGCACTGGGGTTTCATGCCCAGTAAGGAAGATTACCTCAAAGTGCTGTGCCAAGCAGATGTCGTCGTTTCCACAGCCAAGCACGAGTTTTTCGGAGTAGCAAT
Seq A exon
GTTAGAAGCAGTGCATTGTGGATGTTACCCCCTGTGTCCGAAGGCTTTGGTCTACCCTGAAATATTCCCTG
Seq C2 exon
CAACATATCTGTATTCAACACCTGAACAGCTGTGCAAAAGACTACAGGAATTCTGCAAGCGTCCGCAATTAGCCAGACAACATGTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020642-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053415=Glycos_transf_1=FE(31.0=100)
A:
PF0053415=Glycos_transf_1=FE(15.5=100)
C2:
PF0053415=Glycos_transf_1=PD(18.7=93.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGACCACATCCAGCACTG
R:
GGACGCTTGCAGAATTCCTGT
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]