BtaEX6010145 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005235 | DPP10
Description
Bos taurus dipeptidyl-peptidase 10 (non-functional) (DPP10), mRNA. [Source:RefSeq mRNA;Acc:NM_001078070]
Coordinates
chr2:68018086-68058403:+
Coord C1 exon
chr2:68018086-68018124
Coord A exon
chr2:68028749-68028856
Coord C2 exon
chr2:68058312-68058403
Length
108 bp
Sequences
Splice sites
3' ss Seq
TACGTGCTTCTGTTTTTTAGAAT
3' ss Score
9.65
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAATATGAAATGACATCAGATACCTGGCTGTCTAAACAG
Seq A exon
AATGAGGAGCCCGTGTTTTCTAGAGATGGTAGCAAATTCTTCATGACAGTTCCTGTGAAGCAAGGGGGCCGTGGAGAGTTTCACCACATAGCTATGTTCCTGGTCCAG
Seq C2 exon
AGTAAAAGTGAGCAAATTACCGTGCGGCATCTGACATCAGGAAACTGGGAAGTGGTAAAGATCCTGGCGTATGATGAAACTACACAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005235-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.4=100)
A:
PF0093016=DPPIV_N=FE(9.9=100)
C2:
PF0093016=DPPIV_N=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATGACATCAGATACCTGGCTG
R:
TTTGTGTAGTTTCATCATACGCCA
Band lengths:
122-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]