HsaEX6015204 @ hg19
Exon Skipping
Gene
ENSG00000175497 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:20823]
Coordinates
chr2:116520148-116534875:+
Coord C1 exon
chr2:116520148-116520186
Coord A exon
chr2:116525873-116525980
Coord C2 exon
chr2:116534784-116534875
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTTCTGTATTTTAGAAT
3' ss Score
11.12
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAATATGAGATGACATCAGATACGTGGCTCTCTCAGCAG
Seq A exon
AATGAGGAGCCCGTGTTTTCTAGAGACGGCAGCAAATTCTTTATGACAGTGCCTGTTAAGCAAGGGGGACGTGGAGAATTTCACCACGTAGCTATGTTCCTCATCCAG
Seq C2 exon
AGTAAAAGTGAGCAAATTACCGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAAGATCTTGGCATACGATGAAACTACTCAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175497-'29-29,'29-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.3=100)
A:
PF0093016=DPPIV_N=FE(9.5=100)
C2:
PF0093016=DPPIV_N=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATGACATCAGATACGTGGC
R:
TTTGAGTAGTTTCATCGTATGCCA
Band lengths:
122-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)