MmuEX6026992 @ mm10
Exon Skipping
Gene
ENSMUSG00000036815 | Dpp10
Description
dipeptidylpeptidase 10 [Source:MGI Symbol;Acc:MGI:2442409]
Coordinates
chr1:123384922-123402871:-
Coord C1 exon
chr1:123402833-123402871
Coord A exon
chr1:123398521-123398628
Coord C2 exon
chr1:123384922-123385013
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTGCCCTTCTCCATTCTAGAAC
3' ss Score
11.15
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAATATGAGATGACGTCCGACACCTGGCTCTCTAAACAG
Seq A exon
AACGAGGAGCCAGTGTTTTCCAGAGATGGAAGCAAGTTCTTCATGACTGTTCCTGTTAAACAAGGTGGAAGAGGAGAATTCCACCACATAGCTATGTTCCTGGTCCAG
Seq C2 exon
AGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036815-'25-40,'25-37,26-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.3=100)
A:
PF0093016=DPPIV_N=FE(9.5=100)
C2:
PF0093016=DPPIV_N=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATGACGTCCGACACCT
R:
TTGAGTTGTTTCATCATAGGCCA
Band lengths:
122-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types