GgaEX6043050 @ galGal4
Exon Skipping
Gene
ENSGALG00000012156 | DPP10
Description
dipeptidyl-peptidase 10 (non-functional) [Source:HGNC Symbol;Acc:HGNC:20823]
Coordinates
chr7:28713671-28718529:-
Coord C1 exon
chr7:28718491-28718529
Coord A exon
chr7:28717071-28717178
Coord C2 exon
chr7:28713671-28713762
Length
108 bp
Sequences
Splice sites
3' ss Seq
TAACAATCTCACTCTTACAGAAT
3' ss Score
8.72
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAATATGAAATGCAATCAGATCTTTGGGTTCCTAAACAG
Seq A exon
AATGAAGAACCCATTTTCTCCAGGGATGGCACTAAGTTCTTCATGACTGTCCCAGTGAAACAGGGAGGCCGGGGCGAATTTCACCACATAGCCATGTTTATTGTTCAG
Seq C2 exon
GCTAAAAGTGAGCAGATCATGGTGAGACACCTGACATCAGGAAACTGGGAAGTTATCAAAATCCTGGCATATGATGAAAGTACTCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012156-'16-20,'16-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(3.3=100)
A:
PF0093016=DPPIV_N=FE(9.5=100)
C2:
PF0093016=DPPIV_N=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAATGCAATCAGATCTTTGGGT
R:
TTGAGTACTTTCATCATATGCCAGGA
Band lengths:
122-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]