BtaEX6010413 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016784 | DNAH7
Description
Bos taurus dynein, axonemal, heavy chain 7 (DNAH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001143874]
Coordinates
chr2:84989690-85001871:-
Coord C1 exon
chr2:85001808-85001871
Coord A exon
chr2:85000920-85001067
Coord C2 exon
chr2:84989690-84989777
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTCTTAATTCAAGCTG
3' ss Score
7.32
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
TTGAATGTAAAGCAGGATGAAGATATTCCAGAGCAGTTTAGTGTTAAAAATGAACAGTCATATG
Seq A exon
CTGAATACAAGGAACGCTTTGGGAAAAAGGGCAGGTTACTTGACCAGATTGATGATAGTCATGCTGGACCATCTACTTCCAGAGGAAAGAGCAAATCTCCACATAAAGAACGAGAGAACTTCAGAAGCACCCTTGTTAATGTCATCAT
Seq C2 exon
GCAACAAGATGCTGCCTTAGACTCAGCGACTCCTGATGAAAGCACACTTCCAAAACTAACCACTTCTGCAATAGAGAAAGACATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016784-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.720 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTAAAGCAGGATGAAGATATT
R:
TGTCTTTCTCTATTGCAGAAGTGGT
Band lengths:
146-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]