GgaEX7005834 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9274236-9275016:-
Coord C1 exon
chr7:9274908-9275016
Coord A exon
chr7:9274646-9274793
Coord C2 exon
chr7:9274236-9274320
Length
148 bp
Sequences
Splice sites
3' ss Seq
CAAAATGTGCTTTCTGCAAGGAG
3' ss Score
2.67
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GCAGCATCTCATCAACCATGGCAGCAGACTCGTCCTTCATTCCGTCTGAGTAAAGAATGGAAAGATGATGAGCCAGATGAGTTTTCTGTAAAAAATGAGTACCCATCTG
Seq A exon
GAGAATATTTGAAGGCAAGATGCAAGAGAATCAAGATACAGGATTCCAGAGATAATGAACCTGAGCCATCAACTTCTAAATTGCAGACCAGCAGTCATCTGAAAAAAAGCCAGGAACGTTTCAGAAATGCCCTCGTTAACATTATATT
Seq C2 exon
GCAGGAAGACATTGCTGAAGAACCCCTTAATGAGTCTCAGCCTTCAACCGCAGATTCCTCTACACCAATAGACAAGGATATTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=0.520 C2=0.552
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATCTCATCAACCATGG
R:
CACAATATCCTTGTCTATTGGTGTAG
Band lengths:
194-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]