MmuEX0015019 @ mm9
Exon Skipping
Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46140550-46154930:+
Coord C1 exon
chr1:46140550-46140658
Coord A exon
chr1:46142400-46142547
Coord C2 exon
chr1:46154843-46154930
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTTAAATTTAAGCTG
3' ss Score
6.87
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACAGGAGTCAAGCCCCAGTGGCAGCAGATAGCTCCATCATTCCATTTAAATATGAAACAGGAAAACCCAATTCTAGAACCCTATCCTGTTAAAAATGAGCAGTCGTTTG
Seq A exon
CTGACTACATGGAGTACTTCCAGCAAAAAGGCAAACAACTGTACCAAATCGATGATAAACGTTCTGGTCCATCAACTTCCAGATCAAAGGTCAAATCTCCACAAAAGGAGAGAGAGAATTTCAGAAGCACCCTCGTCAAACTCATTAT
Seq C2 exon
GCAACAAGATGGTGATTTAGAGTCCGATGTCATTGATGAGAGCGGTATTCCAAAAGCAACCACTACTGCAAGAGAGAAAGACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'4-5,'4-4,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=0.460 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAGTCAAGCCCCAGTG
R:
CGAGATGTCTTTCTCTCTTGCAGT
Band lengths:
197-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: