HsaEX6017548 @ hg19
Exon Skipping
Gene
ENSG00000118997 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:18661]
Coordinates
chr2:196892684-196913128:-
Coord C1 exon
chr2:196913020-196913128
Coord A exon
chr2:196912076-196912223
Coord C2 exon
chr2:196892684-196892771
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGTTTTAATTTAAGCTG
3' ss Score
7.17
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTGAGTACAAAGCCCCACTGGCAGCAGGCAGCTCCATCATTCCATTTGAGTGTAAAGCAGGATGATGAGAGTCCAGAACCATTTAGTGTTAAAAATGAACAGTCCCATG
Seq A exon
CTGAATACATGGAACGTTTTGGAAAAAAGGGCAAATTACCCCACCAAGTTGATGATAGTTATGTTGGACCATCTACTTCCAAATCAAAGGGCAAATCTCCACATAAAGAACGAGAAAACTTTAGAAGTACTCTTGTTAATGTCATTAT
Seq C2 exon
GCAACAAGATGCTGACTTAGACTCAGCTGTCCCTGATGGAAGCACAATTCCAAAACCGACCGCTTCTGCTATAGAGAAAGACATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118997-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.840 C2=0.518
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGTACAAAGCCCCACTGG
R:
AGATGTCTTTCTCTATAGCAGAAGC
Band lengths:
195-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)