MmuEX1008696 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53663804-53698694:-
Coord C1 exon
chr1:53698632-53698694
Coord A exon
chr1:53684966-53685054
Coord C2 exon
chr1:53663804-53663891
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTTTAAATTTAAGCTG
3' ss Score
7.15
5' ss Seq
AAGGTCAAA
5' ss Score
1.82
Exon sequences
Seq C1 exon
GATAAACTATCCAGCAAAGAAAAGGTCAAGCTGCCGACAACAGTCTTACCACAGTTATCTTTG
Seq A exon
CTGAATACATGGAGCACTGCCAGAAAAAAGGAAAACTTCTGGACCAAATTGATGATGACCGTTCTGCACCATCAACTTCAAGATCAAAG
Seq C2 exon
GCAAAAAGATGGTGGTTTAGAGTCCGATGTCATTGATGAGAGTGGTATTCCAAAAGAGACCACTTCTGCAACGGAGAAAGACATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141_MULTIEX2-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.633 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAAACTATCCAGCAAAGAAAAGGT
R:
CGAGATGTCTTTCTCCGTTGCA
Band lengths:
151-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types