DreEX6036391 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25244159-25244697:-
Coord C1 exon
chr9:25244607-25244697
Coord A exon
chr9:25244335-25244500
Coord C2 exon
chr9:25244159-25244249
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTGCAACCTCCCTTAAAAAGGCA
3' ss Score
4.51
5' ss Seq
TATGTGGGT
5' ss Score
-0.5
Exon sequences
Seq C1 exon
GCCCGATCCAAACCTCGCTGGCATGAAGCAAGTCCAAGCTTTAGACTTCAGGGGACAGCTCAGCAAGATACCCAAGGCTTTTTACTCTCCA
Seq A exon
GCATTCAGGAAGCAGGAGTACAGTGGCATCAGACTCGTCGGCAAGGTTTACTCCAAGCGGGAACCAAAGATGGAAGGATTTCAGGAGCGTCTTTCAAGCAGCATGGTGGTGTCCAACCCAAGAGGGATCGTGAGCAGTTTCGAAGTGCTCTCGTCAGCATTATTAT
Seq C2 exon
GCACCGTGAAGATGACCCTGCTAAATCAGTCACAGAAATCAGCACCCCATCCACTTCAGGTCCACCTACTGCTGCAGAGAAAGACATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.571 C2=0.613
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCAAACCTCGCTGGCATG
R:
CAAAATGTCTTTCTCTGCAGCAGT
Band lengths:
178-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]