RnoEX6039674 @ rn6
Exon Skipping
Gene
ENSRNOG00000052194 | AABR07067728.1
Description
dynein, axonemal, heavy chain 7 [Source:NCBI gene;Acc:252893]
Coordinates
chr9:59576236-59583529:-
Coord C1 exon
chr9:59583424-59583529
Coord A exon
chr9:59581983-59582130
Coord C2 exon
chr9:59576236-59576323
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTTGCTTTTTAAATTTAAGCTG
3' ss Score
7.15
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
ACAGGGGTCAAGCCCCAGTGGCAGCAGACTGCTCCATCATTCCATTTAAATGTCAAACAGGAAAACCCGATAGAACCCTATAATGTTAAAAATGAGCAGTCATATG
Seq A exon
CTGAATACATGGAGCACTTTGGAAAAAAAGGCAAATTACTGGACCAAATTGATGATACCCGTTCTGCACCATCAACTTCCAGATCAAAGGTCAAATCTCCACATAAGGAGAGAGAGAATTTCAGAAGCACCCTCGTCAACGTCATTAT
Seq C2 exon
GCAGCAAGATTCGAGTTTAGAGCCCGATGTCACTGATGAGAGCGGCATTCCAAAAGCGACCACTTCTGCAATAGAGAAAGACATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052194-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGTGGCAGCAGACT
R:
ATGTCTTTCTCTATTGCAGAAGTGGT
Band lengths:
178-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]