BtaEX6011054 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007830 | PLEKHM3
Description
Bos taurus pleckstrin homology domain containing, family M, member 3 (PLEKHM3), mRNA. [Source:RefSeq mRNA;Acc:NM_001206217]
Coordinates
chr2:96665018-96720174:-
Coord C1 exon
chr2:96719264-96720174
Coord A exon
chr2:96696951-96697886
Coord C2 exon
chr2:96665018-96665163
Length
936 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCCTTTCTTTCTAGAAC
3' ss Score
12.02
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCAAGCGGAGGTTTATGGGATCCAAGAAGTCCCTGAACTGGTGGGGCGGGAGGTCCTCGGTAACATAGACAATGGTGCTATCAGAAATGTCACCTCCCTGGGCCAGGGTGGCGTGATCTGGGACCATTGTAAGACCAGACTCTTAGACACCAAAGTTCCAAATGTCTTCCCTGCCAAAGAACAGTTTATGGTCCAGAAGGGAACGACCCCAGATAATCTGTCCTGGATGGAACAAAAGGAAGCATCCACCTTTAATTTTTTCAACATCTGTCAGCGTCGGAGAGACAGGCCTCGTTCTGTGAATGACTTATTGGATGAGACCTCTACTTTTAAGCCTGGGCATGCTCGATCAAGGTCAGATATTACCCAGGTGGACTGGAGGGTGGTCCTCAAAACCATGCCTCTGCAGCAAGAAGTATCTCTTCAGGGTCCTCACTTTGCCAGGCCTTCTTTGCTGTTGTCCTCATCAAACAAGGTAGAAGATGCTCAAGGAAATACAG
Seq A exon
AACACAAGCCAGCATTCCCGAACATCCTGAAGAAGGGTTACCTGGAGATTCGGAAGGAGCATGACAGTTACTGGCAAAGCTGTTACGCCGAGCTCTCCCCCTACAGCTTATACTTCTACAGCCTCGACAGCAGTGGGAATCAGAACCTCTACGCCACGTACCAGCTGTCCCACTTCCAGAGCATATCCGTTCTGGGAAACCTTGAGGCCAGGCTGGTGGACACCGTCCTGTATGACAACACTCAGCTGCAGCTAAAGGCAGAGTCACCGTGGGAGGCTTTGGACTGGGGGCAGAAGCTCTGGGAAGGTGTGCATGCGGCCGCACCAGCCTACATGGGCCGGCCGGGAGAGCTGGCCAACTCCCCGGGGCTTGGCCATCATGTGGACTGTCCACAGAATCATTGTTTACAGAAGAAATCCCGCGAGCTGCTCATGCCATCCCCTGTGCTGGATAGCCCCAAACAGTATCAAAACATCCTCAAATCCGGGACACTGTACAGGCTGACCATGCAGAACAACTGGAAGGCATTTACGTTTGTGCTGAGCAGGACCTGCCTGATGGCCTTTCCGCCGGGCAAGCTGGACGAGGACCCCCTGCTGAGCTACAATGTGGACGTGTGTCTGGCCGTCCAACTGGACCACCTGGACGACTGTGATTCTTGCTTTCAAGTCATTTTCCCCCAAGATGTCCTCCGCCTCCGTGCTGAGACGCGGCAGAGGGCTCAGGAGTGGATGGAGGCCCTGAAAACAGCTGCCAACACGGCAAGGAGCTCAGAACAGAACCTGCAGGTCACGCTGAGGACCAAACCCAGGGATCAGATGGGTGGGCACGAACTCAGGAAGAACAAACGCCAGTCGGTGACTACTAGCTTCCTTAGCATCCTGACGACTTTGTCTCTGGAACGAGGGCTCACTGCTCAGAGTTTCAAATGTGCAG
Seq C2 exon
GATGCCAGCGATCCATAGGCCTTTCCAACGGGAAAGCCAAGGTGTGCAGCTACAGCGGGTGGTATTACTGCAGCAGCTGCCACGTGGACGACAGCTTCCTGATCCCAGCCCGCATAGTCCACAACTGGGACACTTCAAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007830-'3-5,'3-2,5-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.166 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=30.4)
C2:
PF139011=DUF4206=PU(34.7=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACATCTGTCAGCGTCGG
R:
GATCAGGAAGCTGTCGTCCAC
Band lengths:
345-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]