RnoEX0067127 @ rn6
Exon Skipping
Gene
ENSRNOG00000023760 | Plekhm3
Description
pleckstrin homology domain containing M3 [Source:RGD Symbol;Acc:1307151]
Coordinates
chr9:71592693-71631985:-
Coord C1 exon
chr9:71631162-71631985
Coord A exon
chr9:71616769-71617701
Coord C2 exon
chr9:71592693-71592838
Length
933 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTTCTTTCTAGAAC
3' ss Score
11.98
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGTCCAGGAAGTCCCTGAACTGGTGGGGCACGAGGTACTTGGTAACATAACAGACAATGGTGCTTTGCGAAGCGTCGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTCCTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGGTCCAGAGAGGGACAGCCCCAGACAATCTTTCCTGGATGGAACAGAAGGAAGCATCAACCTTCAACTTCTTCAACATTTGTCAGCGTCGGAGGGACAGACCTCGCTCTGTGAATGACTTATTGGACGAGACCACGACTTTCAAGCCAGGACATGCTCGGTCAAGGTCCGATGTTACCCATGTTGACTGGCGGGTAGTCCTGAGCACCATGCCTTTGCAGCAACAGCAGCAGCAGCAGCAGGCGTCCCTTCACGGCCCTCACTTCCCCAGGCCGTCTTTTCTGTTGTCTTCATCCAATAAGGTTGAAGATGCTCAAGGAAATACAG
Seq A exon
AACACAAGCAGACATTCCCAAACATACTGAAGAAGGGTTATCTGGAGATCAGGAAGAACCATGACAGTTACTGGCAAAGCTGTTATGCAGAACTCTCACCCTACAACTTAAACTTCTACAGCCTCGATAGCAGTGGGAATCAGAACCTTTATGCCACGTACCAGCTTTCCCACTTCCAGAGCATATCTGTTTTAGGCAATCTGGAGGCCAGGATGGTAGACACTGTTCTCTACGACAATTCTCAGCTGCAGCTAAAGGCAGAGTCCCCGTGGGAGGCGTTGGACTGGGGGCAGAAGCTCTGGGAAGTTGTACATGCTGCTGTGCCCAATTACATGGCACGGCAGGAGGAGAAGGCAAACTCTCCAGGACTTGGTCATCATGTTGACTGTGCACAGAACCACTGTTTACAGAAGAAATCTAGTGGGCTGCTGGCCTCCCCTGTCTTGGATAGCCCCAAACAGTACCAAAACATCCTGAAATCAGGGACACTCTACAGACTGACTGTCCAGAACAACTGGAAGGCCTTTACATTTGTGCTGAGCAAGGCCTACCTTATGGCTTTCCACCCTGGCAAGCTAGACGAAGATCCCCTCCTGAGCTACAATGTAGATGTGTGTCTGGCTGTGCAGACAGACAACCTGGATGGTTGTGACTCTTGCTTTCAAGTCATTTTCCCTCAGGATGTCCTCCGCCTCCGGGCTGAGACCCGACAGAGGGCTCAGGAATGGATGGAGGCTCTGAAGACAGCAGCTAATGCTGCAAGGAGCTCCGAGCAAAACCTGCAAGTCACACTGAGAAACAAACCCAAGGATCAGCTCGGTGGCCATGAACTGCGGAAGAACAAACGCCAGTCCGTGACCACCAGCTTCCTGAGCATCCTGACTACGCTGTCTTTGGAGCGAGGACTCACTGCTCAGAGTTTCAAATGTGCAG
Seq C2 exon
GGTGCCAGCGACCCATTGGTCTGTCCAATGGCAAGGCCAAGGTGTGCAATTACAGTGGGTGGTACTACTGCAGCAGCTGCCACGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTCCACAACTGGGACACCTCAAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023760-'6-8,'6-6,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.064 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=30.4)
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTTGTCAGCGTCGGAGG
R:
ATGAGAAAGCTGTCGTCCACG
Band lengths:
356-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]