GgaEX1044508 @ galGal3
Exon Skipping
Gene
ENSGALG00000008479 | PLEKHM3
Description
NA
Coordinates
chr7:13099304-13123010:+
Coord C1 exon
chr7:13099304-13099907
Coord A exon
chr7:13108679-13109614
Coord C2 exon
chr7:13122865-13123010
Length
936 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTTGTTTCTTCTAGAAC
3' ss Score
10.6
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGTGTTTGGTGTCCAGGATGTGCCTGAGCTGGTTGGGCATGAGGTGTTTGATCAGATAACAGAGAGCAGGAATCTAAGGAACGTCGCCTCCTTAGCCAAAAGTAGCCTCATTTGGGATCACTGCAAAAATGGCCTCTTGGAAACCAAAGCCCAGACAGTATTCTCTGCTAAAGATCAGCACGTGGTGCAGAGGGGAACAGCTGCTGACAACCGTGCTTGGGCAGGGGAAGGAGAGACTGCGGCTTTTAACATCTTCAACATCTGCCAGCGGAGGAGGGACAGGCCTCGATCAGTGAATGACATCCTGGTGCAGAATGAAGAGGCCTCTACATTCAAGCCAGGACACAACCGCTCACGCTCTGATATCAGCCATGTAAACTGGGGAGTGGTCTTCACTGGCACCTCTCTGCAGCAGCCAGCTCTGCCAGGTCAGGACAATAACTGTGCTCTGCTCTCCTACCTGGCGTTAACCAAGGGACAGGACATCCAAGGAAACACAG
Seq A exon
AACACAAGCCAACGTTCCCAAATATTCTGAAGAAGGGATACTTAGAAATTAGAAGAGACAATGACAGCTACTGGCAAACCTGTTATGCTGAGCTCTCCCCGTACAAACTGTACCTGTATTGCCTGGACAGCAGTGGCAACCAGACTCTTCCCACCGTGTATCCGCTCATGCATTTTCAAAGAGTCACTGTTACTGGTAGCATTGAAGCCAAGGTTGTGGAGGCTGTCTTGTCGGACAACTCTCAGCTGCAGCTGAAGGCAGAGTCATCATGGGAGGCTTTGGACTGGGGGCGGAAGCTCTGGGAAGTGATGCGTGCTTCTGTGTCTACTTTCACAAGACAGCCAGAGCAAGTGGAGAATGTGCCAGAGCCTGACAATAGCAGTGACCGTTCTCAAACTAATGGATTGGTAGAGAAGCCTGTGGAACTTTTGCTGTCTATGAATTTGACTGAAAATACTAAAGAATACCAAAACATTCTCAAATCGGGGACTCTTTATAGGTTAACTGTCCAGAATAACTGGAAGGCATTTACTTTTGTCTTAAATAGGTCTTATCTAATGGCATTCCAACCTGGTAGGCTTGATGAAGACCCTCTGCTGAGCTACAATGTTGACGTTTGCCTGTCGGTTCAGACCGATGCTCAAGATGGCTGTGACTCTTGCTTTCAGGTCATTTTTCCTCAAGATGTCCTCCGCCTGCGTGCAGAGACCCGTCAGAGGGCCCAAGAGTGGATGGAAGCACTGAAAACGGCTGCTAATGTCACTAGAAGTCTAGGTCAGAACCCACAGGTCACACTGCGAAACAAACGTGGAGATCGACCTTTTGGAAATGATTTCAGGAAGAGCAAGCGCCAGTCTGTGACAACCAGCTTCCTCAGCATCCTGACCACACTGTCTCTGGAGAGAGGACTCACAGTTCAGAGTTTCAAGTGTGCAG
Seq C2 exon
GCTGTCAGCGCTCCATAGGCTTGTCCAATGGCAAAGCCAAGGTGTGTAGCTACAGTGGATGGTATTATTGCTGTACCTGTCATGTGGATGACAGCTTCCTCATCCCTGCACGACTGGTTCATAACTGGGATACTTCCAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008479-'0-2,'0-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=30.4)
C2:
PF145671=SUKH_5=FE(55.8=100),PF139011=DUF4206=PU(24.0=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTCAACATCTGCCAGCGG
R:
GGGATGAGGAAGCTGTCATCC
Band lengths:
356-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]