DreEX0056319 @ danRer10
Exon Skipping
Gene
ENSDARG00000030633 | plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-382]
Coordinates
chr9:28340081-28359858:+
Coord C1 exon
chr9:28340081-28340949
Coord A exon
chr9:28349189-28350136
Coord C2 exon
chr9:28359713-28359858
Length
948 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTTATTTTTTCCAGCTC
3' ss Score
7.92
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
TTCTCCACCCCTCGGCTTCTTCTGTGACACCAAAACTGTCGAGGTGATGGAGGGTCTGGAGGTCGAGGATATTAGTCCAGCCCTCGAGGCCACCGAGGACTACCTGCACTGCCTCGATGACAATCACGGAGATGCCCAGGTACACCCACCCAAACTTAAAGAGGCATCCACCTTGGACAAGCTGAACTCCAGTGGGGTGTGGGGGCTTCTGACAGGAAAGCAGTCTCAGCTATCACCTGGTAATATGGCCTGGGCAGAGCAGACTCCCTTCAGTGTGCTGAGCCTTCGAAATGGGAAAAGAAACCGAGCTCGATCCACCAATGATTTGGCGGCACATGCCAAAGAGACAAACTCCACCACCAACACGTCCAGCGGGGGCTTCAAACGTGGCCACAATCGCTCCCGTTCAGATGTCAACAACCGCACCTACACCGATAATGGCATGCCAGCCATTGATAAAAATATGTTCAAGAACATGGCGCTAAACGACCACAGGGATG
Seq A exon
CTCACAAGGAGAGCAGCTCTTACCTGGTGAAGCAGGGAACTCTAGAACAGCGAGAAGGCCCGTGGGGACGGTGGACTGCCTGTCATGTGGAGCTTACACCCTGCGAACTGCGTCTCTACAGCCTCGACAGCAGCGGAAACCAGCAGCTATGTGCCGCCCTCTCGCTGTCCCACTGCCAAGGGGTAAGTGCGCCACAGCCACAGGACGGACGGGTGCTACAGGCCGTCTTCTTTAACAGCACCCGTGTGCAGTTACGAGCACCCTGCCAGTGGGAGGCACTGGAGTGGCGTAGACTCCTCTGGGAACGAGTCTTGGCCGCCCGTCCCACTCACAGCAAAGCGGAGCCAGCTTGTGCCAACTCCCCAACCCCCCATGAACCTGACCCAGATGCAGCGATGGTTCCCGCTCCTCGTCCACTGGTACGTCCCACCGCCCTACCACTGTTCACCCAGCACTGTGCTGATGTTCTCAAGTCTGGCCTTCTGCACCAACTCACCGACCTCAACAACTGGAGGGCCTTCACGTTTGTACTGAGCAGGACTGATCTGCAGGCCTTCCCGACTGAGGGAAGAGGTCCAGTGTCTGAGCCAGTGCTGCGGTACCAGCTGGCATCCTGTCTGGCTGTGCAGCGGGATGATGAAGACGGAGGCAGGAGCTCCCGCTTTCAGGTCGTCTTTCCTGATGATGTGCTACGTCTGCGGGCAGAGAACGAGGCTAAGGCCCAGGACTGGGTTGAGGGTCTTCGCATTGCAGTGACAGCTCAGCGGCCGCAGTGTGAGAGTACTGAAGCCCCCAGCGGAGTCTTGATGAGGAACAAGCCAACCAGGGAGAAAAAGCACAAGGAGGCCCAGAGAGCTAAACGGCAGTCTGTCACAACTAGCTTTCTCAGCATCCTTACCTGTCTGGCCGTAGAAAAGGGCCTCACTGCTCAGAGCTTCCGATGTGCAG
Seq C2 exon
GATGTCAGAGGCCAGTGGGTCTATCACGGGGCAAGGCCAAAGTTTGCGCCTACAGCGGCTGGTACTACTGCACAAGTTGTCACCAGGACAACCTCTTCCTCATACCTGCCCGTCTGTTGCACAACTGGGACACTAATAGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030633-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.227 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=29.7),PF0016924=PH=WD(100=30.9)
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAATATGGCCTGGGCAGA
R:
GTCCTGGTGACAACTTGTGCA
Band lengths:
352-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]