MmuEX6024860 @ mm10
Exon Skipping
Gene
ENSMUSG00000051344 | Plekhm3
Description
pleckstrin homology domain containing, family M, member 3 [Source:MGI Symbol;Acc:MGI:2443627]
Coordinates
chr1:64892752-64938539:-
Coord C1 exon
chr1:64937697-64938539
Coord A exon
chr1:64921550-64922482
Coord C2 exon
chr1:64892752-64892897
Length
933 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTTTTCTTTCCAGAAC
3' ss Score
12.45
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GATCCAAGAAGTCCCTGAACTGGTGGGGCATGAGGTACTTGGTAACATAGCAGATAATGGTGCTTTAAGAAGCGTTGCTTCCCTGGGCAAGGGGACAATGATTTGGGACCACTGTAAGAGCAGGCTTTTAGAAACCAAAGCTCAAAATGTCTTCCCTGCCAAAGAACAGCTTATGGTCCAGAGAGGGACAGCCCCAGATAATCTTTCCTGGATGGCACAAAAGGAAGCGTCAACCTTCAATTTTTTCAACATCTGTCAGCGTCGGAGGGACAGACCTCGTTCTGTGAATGACTTATTGGATGAGACCACAACTTTCAAGCCAGGCCATGCTCGGTCAAGGTCCGATGTTACCCACGTAGACTGGCGGGTAGTCCTTAGCACCATGCCTTTGCAGCAGCAGCAGCAGCAGCAGCAGGCGTCCCTTCAAGGCATTCACTTTCCCGGGCCATCTTTTCTGTTGTCTTCACCCAGCAAGGTTGAAGATGCTCAAGGAAATACAG
Seq A exon
AACACAAGCAGACATTCCCAAACATCCTGAAGAAGGGTTATCTGGAGATCAGGAAGAACCATGACAGTTACTGGCAGAGCTGTTATGCAGAACTCTCACCCTACAACTTAAACTTCTACAGCCTTGATAGCAGTGGCAATCAAAACCTGTATGCCACATACCAGCTTTCCCACTTCCAGAGCATCTCTGTTTTAGGCAATCTTGAAGCTAGGATGGTAGACACTGTTCTCTATGACAATTCTCAACTGCAGCTAAAGGCAGAGTCTCCATGGGAGGCATTGGACTGGGGGCAGAAGCTCTGGGAAGTCGTGCATGCTGCTGTACCCAATTACATGGGACGGCAGGGTGAGATGGCAAACTCTCCAGGACTCATCCATCATGGTGACTGTGCACAGAACCACTGTTTACAGAAGAAATCCAGTGGGCTGCTGGCCTCCCCTGTCTTGGATAGCCCCAAACAGTACCAAAATATCCTCAAATCAGGGACACTCTACAGACTGACTGTCCAAAACAACTGGAAGGCCTTTACATTTGTGCTGAGCAAGGCCTATCTTATGGCTTTCCACCCCGGCAAGCTAGACGAAGATCCCCTGTTGAGCTACAATGTGGATGTGTGTCTGGCTGTGCAGATAGACAACCTGGATGGTTGTGACTCTTGCTTTCAAGTCATTTTTCCCCAGGATGTCCTCCGCCTCCGGGCTGAGACCCGACAGAGGGCTCAGGAATGGATGGAGGCTCTGAAGACAGCAGCCAACGCTGCAAGGAGTTCTGAGCAAAACCTGCAAGTCACACTGCGGAACAAGCCCAAGGATCAGCTAGATGGCCGCGAGCTGCGGAAGAACAAACGCCAGTCTGTGACCACCAGCTTCCTGAGCATCCTGACCACGCTGTCTTTGGAGCGAGGACTCACTGCTCAGAGTTTCAAATGTGCAG
Seq C2 exon
GGTGCCAGCGATCTATTGGTCTCTCTAACGGAAAGGCCAAGGTGTGCAATTATAGCGGGTGGTACTACTGCAGCAGCTGCCATGTGGACGACAGCTTTCTCATCCCAGCACGCATAGTTCACAACTGGGACACCTCAAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051344-'5-6,'5-3,8-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=0.054 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0016924=PH=WD(100=30.4)
C2:
PF139011=DUF4206=PU(17.2=71.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGACAGACCTCGTTCTGT
R:
ATGCGTGCTGGGATGAGAAAG
Band lengths:
351-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types