BtaEX6011484 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107155428-107157052:+
Coord C1 exon
chr2:107155428-107155526
Coord A exon
chr2:107156229-107156382
Coord C2 exon
chr2:107156952-107157052
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCCTTCTCGTCCCAGAAC
3' ss Score
9.45
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GACTGTTACATCCTGGACCAGGGAGGCCTAAAGATCTATGTGTGGAAGGGGAAGAATGCCAACGCCCAGGAGAAGAAGGAAGCCATGAACCAGGCACTG
Seq A exon
AACTTTATCAAAGCGAAGCAGTACCCGCCGAGCACACAGGTGGAGCTGCAGAACGACGGGGCCGAGTCAGCTGTCTTTCAGCAGCTCTTCCAGAAGTGGACAGTACCCAACCGGACCACCGGCCTAGGCAAAACCCACACCGTGGGCTCCGTGG
Seq C2 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCCATGTCCATGCATGTCCAGCCTCAGGTGGCTGCCCAGCAGAAGATGGTGGACGATGGGAGTGGGGAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'10-11,'10-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.077 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(42.1=100)
A:
PF0062617=Gelsolin=PD(34.2=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTACATCCTGGACCAG
R:
CTCCCCACTCCCATCGTCC
Band lengths:
194-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]