DreEX6090008 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:213173-214524:-
Coord C1 exon
chr11:214426-214524
Coord A exon
chr11:213405-213558
Coord C2 exon
chr11:213173-213273
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTATCTGACTTTAGGAG
3' ss Score
6.85
5' ss Seq
TCGGTGCAT
5' ss Score
0.95
Exon sequences
Seq C1 exon
GACTGCTACATCTTGGACCAGGGGGGCGTGTCCATCTTCGTGTGGAAGGGAAAGATGGCCAATAAGGCGGAGAGACAAGCAGCGATGACCCGAGCTCTG
Seq A exon
GAGTTCATCAAGCTGAAGAATTACCCGCTCAGCACCAAAGTGGAGTCCATCTGTGACGGAGGAGAATCAGCTCTGTTCAAGCAGCTCTTCAAGAACTGGACAGTCAAAGACCAGACGCAGGGCCTGGGCCGCACACACACTGTTGGAAAAATCG
Seq C2 exon
CTGATGTTCCTCAGGAGAAGTTTGATGCCAGCCGGATGCACATGATGCCGGAGGTGGCGGCGCAGGAGCGCATGGTGGACGACGGCAGCGGGGAGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.088
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.6=100)
A:
PF0062617=Gelsolin=PD(33.8=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACATCTTGGACCAGGGG
R:
CTGTTTCTCCCCGCTGCC
Band lengths:
197-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]