BtaEX6021848 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55991236-55992360:+
Coord C1 exon
chr5:55991236-55991334
Coord A exon
chr5:55992004-55992157
Coord C2 exon
chr5:55992260-55992360
Length
154 bp
Sequences
Splice sites
3' ss Seq
GGGGTGGGGGGTACCCACAGGAC
3' ss Score
2.29
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GACTGCTACATCCTGGACCAAAGTGGAACCAAGATCTATGTGTGGAAAGGAAGAGGAGCCACAAAGGTTGAGAAACAGATGGCCATGTCTAAAGCCCTG
Seq A exon
GACTTCATCAGGATGAAGGGCTACCCCAGCAGCACCAACGTGGAGACCGTCAATGACGGTGCCGAGTCAGCCATGTTCAAGCAGCTGTTCCAGAAGTGGACGGTGAAGGAACAGACCGTGGGTCTGGGGAAAACGTTCAGCGTGGGTAAAGTTG
Seq C2 exon
CGAAGGTTTTCCAGGATAAATTTGATGTAACTCTGCTGCACACCAAACCAGAGGTGGCAGCCCAGGAAAGAATGGTGGATGACGGCAACGGCAAAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATCCTGGACCAAAGTGG
R:
CAACTTTGCCGTTGCCGTCAT
Band lengths:
194-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]