MmuEX6051738 @ mm9
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126446017-126447133:+
Coord C1 exon
chr10:126446017-126446115
Coord A exon
chr10:126446785-126446938
Coord C2 exon
chr10:126447033-126447133
Length
154 bp
Sequences
Splice sites
3' ss Seq
GGGGGATGTGGGGACTGCAGGAT
3' ss Score
-1.09
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
Exon sequences
Seq C1 exon
GACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAGGCAAAGGAGCCACCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq A exon
GATTTCATCAAGATGAAGGGATACCCCAGCAGCACCAACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACGGGCTTGGGGAAAATATTCAGCACTGGTAAAATCG
Seq C2 exon
CTAAAATCTTCCAGGACAAGTTCGATGTGTCTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGCCAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTACATCCTGGACCAA
R:
CTTTGCCGTCGTCCACCATTC
Band lengths:
189-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: