MmuEX6051738 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127008961-127010077:+
Coord C1 exon
chr10:127008961-127009059
Coord A exon
chr10:127009729-127009873
Coord C2 exon
chr10:127009977-127010077
Length
145 bp
Sequences
Splice sites
3' ss Seq
GGGGGATGTGGGGACTGCAGGAT
3' ss Score
-1.09
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAGGCAAAGGAGCCACCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq A exon
GATTTCATCAAGATGAAGGGATACCCCAGCAGCACCAACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACGGGCTTGGGGAAAATATTCAGCACTG
Seq C2 exon
CTAAAATCTTCCAGGACAAGTTCGATGTGTCTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGCCAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'15-15,'15-14,16-15
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCTACATCCTGGACCAA
R:
CTTTGCCGTCGTCCACCATTC
Band lengths:
189-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types