GgaEX0017222 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22035084-22035616:-
Coord C1 exon
chr7:22035518-22035616
Coord A exon
chr7:22035274-22035427
Coord C2 exon
chr7:22035084-22035184
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGGATCTGGCTCCCCTCAGGGC
3' ss Score
8.15
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACTGCTACATCCTTGATCAAGCAGGTCTCAAGATCTTTGTGTGGAAGGGCAAGAATGCCAACAAGGAGGAGAAGCAGCAGGCAATGAGCAGGGCCCTG
Seq A exon
GGCTTCATCAAAGCCAAGAACTACCCGGCCAGCACCAGCGTGGAGACAGAGAACGATGGGTCTGAGTCCGCTGTCTTCAGGCAGCTCTTCCAAAAATGGACTGTTCCCAACCAAACCAGTGGGCTGGGCAAGACCCATACTGTGGGCAAAGTGG
Seq C2 exon
CTAAGGTGGAACAGGTGAAGTTTGACGCCACCACAATGCATGTCAAGCCTGAAGTGGCCGCCCAGCAGAAGATGGTGGATGATGGATCTGGGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-3/11=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.173 C2=0.118
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACATCCTTGATCAAGCAGG
R:
TGCCTCCCCAGATCCATCATC
Band lengths:
194-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]