RnoEX6040336 @ rn6
Exon Skipping
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81701765-81703603:+
Coord C1 exon
chr9:81701765-81701863
Coord A exon
chr9:81702774-81702927
Coord C2 exon
chr9:81703503-81703603
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGACCCTCTTCTTTTCCCAGAAC
3' ss Score
10.1
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAATGCCCAGGAGAGGAGCGGAGCCATGAACCAGGCTTTG
Seq A exon
AACTTCATCAAAGCCAAGCAGTACCCACCTAGCACGCAGGTTGAGGTGCAGAATGATGGGGCTGAGTCCGCCATTTTCCAGCAGCTCTTCCAGAAGTGGACAGTGCCCAATCGGACCTCAGGCCTTGGCAAAACCCACACAGTGGGCTCTGTGG
Seq C2 exon
CCAAGGTGGAACAGGTGAAGTTTGATGCTCTGTCCATGCACGTACGGCCTCAAGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAGTGGGGAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.077 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTACATCCTGGACCAG
R:
ACTTCCCCACTCCCGTCATC
Band lengths:
196-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]