MmuEX6025309 @ mm10
Exon Skipping
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74421779-74423775:+
Coord C1 exon
chr1:74421779-74421877
Coord A exon
chr1:74422927-74423080
Coord C2 exon
chr1:74423675-74423775
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGACCCCCTCCTTTCCCCAGAAC
3' ss Score
10.71
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAACGCTCAGGAGAGGAGCGGAGCCATGAGCCAGGCCTTG
Seq A exon
AACTTCATCAAAGCCAAGCAGTACCCACCGAGCACGCAGGTTGAGGTGCAGAATGACGGGGCCGAGTCCCCCATCTTCCAACAACTCTTCCAGAAGTGGACAGTGCCCAACCGGACCTCAGGCCTCGGCAAAACCCACACTGTGGGCTCTGTGG
Seq C2 exon
CTAAGGTGGAACAGGTGAAGTTTGATGCTCTGACCATGCATGTACAACCTCAGGTGGCTGCCCAGCAGAAAATGGTGGATGACGGGAGTGGGGAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-'16-19,'16-16,23-19=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.105 C2=0.035
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTACATCCTGGACCAG
R:
ACTTCCCCACTCCCGTCATC
Band lengths:
196-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types