RnoEX6031803 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299980-70301119:+
Coord C1 exon
chr7:70299980-70300078
Coord A exon
chr7:70300771-70300924
Coord C2 exon
chr7:70301019-70301119
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTGGGGGTGGGGACTGCAGGAT
3' ss Score
1.05
5' ss Seq
TTGGTGAGA
5' ss Score
6.29
Exon sequences
Seq C1 exon
GACTGCTATATCCTGGACCAAAGTGGCACCAAGATCTACGTATGGAAAGGCAAAGGAGCCACCAAGGTGGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq A exon
GATTTCATCAAGATGAAGGGTTATCCCAGCAGCACCAACGTAGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACTGGCTTGGGGAAAACATTCAGCATTGGTAAAATTG
Seq C2 exon
CTAAAATCTTCCAGGACAAGTTCGACGTGACTCTGCTACACACTAAGCCAGAAGTGGCTGCTCAGGAAAGAATGGTGGACGACGGCAACGGCAAGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'8-11,'8-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.029
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.0=100)
A:
PF0062617=Gelsolin=PD(33.3=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATATCCTGGACCAAAGTGGC
R:
CTCAACCTTGCCGTTGCCG
Band lengths:
196-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]