BtaEX6011810 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108273128-108274541:+
Coord C1 exon
chr2:108273128-108273178
Coord A exon
chr2:108273518-108273680
Coord C2 exon
chr2:108274267-108274541
Length
163 bp
Sequences
Splice sites
3' ss Seq
AGAGGCTGCTGGGTCTGCAGGTC
3' ss Score
3.77
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
ATGGCCAACGGAGTGATCCCGCCACCCGGGGGCGCCTCCCCCCTACCCCAG
Seq A exon
GTCCGGGTGCCCTTGGAGGAGCCACCTCTGAGTCCAGACATGGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq C2 exon
TTCACCGACACACATCCCACCACACCCACCACCCGCTCTCGGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGACTGCCCCCCACCTCTGCTCGGCAGACCAGGAGGAAGAGGAAGAAGGAGAAAACCTCTGCTCCCCCCTCCGAGGGGACTCCTCCCATCCAGGAGGAGGGGGGAGCCGGAGTGGACGAGGAGGAGGAGGAAGAGGAAGAAGAGGGGGAATCTGAGGCTGAACCTGCAGAGCCCCCACCCCCAGGGTCCCCAACAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975-'0-2,'0-0,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.891 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACGGAGTGATCCC
R:
CTCTTCCTCCTCCTCCTCGTC
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]